A really newbie question on hardware

Hello,

I just bought ardupilot and i have some basic questions i hope you could help me.

I had an ATMega 1280 but now it doesn't seem to have enough memory capacity. I bought a new arduino (2560) and a new ardupilot but how can i sold them together??

Probably this is a very stupid question but in her  https://www.sparkfun.com/products/9710 it says atmega 2560 compatible but the ardupilot is way smaller than this arduino. 

Am i thinking in a bad way? Sorry for this, your help would be very appreciated.

Best regards.


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