All waypoints named HOME

Hi 

I have a fixed delta wing type airframe running a pixhawk flight controller. I am having trouble with the plane taking off (Hand launching) but not heading to any of the waypoints. Instead it climbs to the takeoff altitude and then does a very large (Around 200m) arc around the launch point. It does not appear to be loitering as the ark is not even but all over the place. One thing that we have noticed it that all waypoints in the flight data section of mission planner are named home. Not just the home waypoint but all waypoints in the mission now have "Home" above them. I did get the plane to successfully complete one mission but since i have not been able to get it to do anything other than auto take off. I have tried pressing the reset button on the pixhawk and loaded a new mission with the same result. Any help would be much appreciated. 

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