APM 2.6 and radio reciever HELP!!!!

I'm kind of a newbie here on my first build so bear with me..

Having an issue with APM 2.6 and the receiver (Flysky Model FS-R9B)

When I run the setup wizard it loads all the parameters and firmware then half the time it connects from there to continue on with the wizard setup only to lockup at calibrating the accelermoter. The other half the time just drops the connection. My reasoning for believing the issue is the receiver is if i disconnect everything but the GPS-Compass all works fine tell i get to configure radio of course. When i connect the    radio its like it doesn't even recognize it at all. The Trans. and Rec. are all binded together. I can calib. Accelerometer and Compass no problem but as soon as I add radio receiver PROBLEMS

Not to mention i been at this for nearly a week now......

Using a Flysky TH9X Transmitter/ with Flysky FS-R9B Receiver.

The Messed up part is all worked fine on initial setup Firmware,Calibrations, and Receiver

then something went haywire on me and not been good sense. After my initial setup I went back to configure my channel 5 input for flight modes and Mission Planner has not recognized my Trans/Rec. since. On my last effort I realized my Transmitter was set at PPM and I'm not wired correctly to the APM 2.6 for PPM so I set transmitter on PWM with no luck at all.

Any Help would be Awesome as I have yet to get off the ground.

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