Compass issue on pixhawk

Hi, ive a new pixhawk installed and all is well apart from the compass, i cannot seem to disable the onboard one no matter what i do and it shows as working in mission planner - also ive installed the external mag with compass and when thats active it does not move the heading in mp - ive tried all the compass options..  im finding it impossible to identify which is which mag ? any help appreciated/

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