Mandatory Hardware not showing

When I have my pixhawk attached to my macbook pro, I can "Connect" in the upper right hand corner of APM Planner. If I then go to Initial Setup, "Mandatory Hardware" is not showing. 

I have the 3DR GPS, 3DR radio, Transmitter, power module and ESC connected to the board. I've tried w/ the battery connected and disconnected. The safety switch is blinking red. The pixhawk FMU and PWR are solid green, B/E is orange and ACT is blinking blue. The Transmitter is blinking red (FrSky). 

I've attached a screenshot of what I see at Initial Setup.

Any help is much appreciated.

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