Throttle control in strong wind conditions

Hello,I'm flying a plane with APM2.6 and Ardupilot 3.4.I have (not yet) an windspeed indicator.The plane is controlled by Rudder, elevator and throttle only.In normal, low wind, conditions everything appears to be okay.However in Auto mode, flying a mission, with strong head wind conditions the plane stalls, comes out the stall, stalls etc. the throttle appears to oscillate. Also the heading fluxtates heavy.In the above conditions I can manual control the plane.My question's:In Auto mode what throttle input is expected ? or is it a no care ?What parameters control the throttle in Automode ?How is the basic throttle control algorithme working ?Many thanks in advance Maarten

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