I am currently installing the Pixhawk in a fixed wing dual servo aileron plane (one servo for each aileron). Is it okay to just mix the two servos through the Pixhawk and leave my controller alone. I am thinking this is okay, but want to make sure there are no issues when in manual mode.
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No, I mean each aileron servo plugged into a separate out channel (for instance channel 1 and 5).
Read the manual: http://plane.ardupilot.com/wiki/multipleailerons-3/
Thanks for the link!