My current vague understanding is that on Pixhawk, you can choose to use either the native PX4 flight control stack or you can run APM on the PX4 middleware instead: https://pixhawk.org/firmware/apm?s
Which one is better if I am interested in developing codes for indoor autonomous flight?
Also, how should I install APM on PX4 middleware and how to just install the native PX4 flight control?
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I have the same question as well. but it seems no one yet can answer this question.