Ok for all those who have been waiting on this one - I've got the solution:
I will add more detail with screen shots and a video a bit later on - but the general gist of it is, I know there are dozens if not hundreds of people who want to get an APM i
OK So I can upload to my APM...or I can upload to my ardustation...but I am finding that each time I want to upload to either I need to do a copy and replace of the Libraries in my /arduino.1.0.1/libraries directory.
...Umm...How do we do this, do we essentially use the Ardupilot as the ASP and in Arduino choose ATMEGA2560 - load up the firmware as sketches and just upload...?
I think we all need details on how to perform this function.