I updated my charged to balancing one a while ago, but for some reason I didn’t buy one of those new multichargers, which pack a number of separate chargers in to one device. I use two 3S battery packs in parallel configuration on my plane and I have three sets of those. After a day of flying, charging six 3S packs separately is a long and laborious task. Since my charger can handle 6S packs, I thought why not to make an adapter cable to charge two packs at once. Since all the cells are rated the same capacity, charging 2x3S packs in essentially same than charging one 6S pack.
The following cables were build:
First adapter combines balancing leads from two packs to one connector. If you look closely, you can see that the ground wire is a little wriggly. When soldering the cable I did not think it all the way through and connected ground wires from both connectors together. When I connected the batteries, one of the ground wires vaporized with a loud pop. So be sure to leave second ground wire unconnected (pin 1 of the 2nd connector).
Second adapter is more obvious, it just connects the two packs in series. I suggest to number the battery connector which ground wire goes straight to the charger with number one and also the balancing connector which has ground wire connected as number one. These numbered connectors should be connected to same battery.
After connecting the batteries, set your charger to double voltage that the rated pack voltage (22.2v in this case) and charging current to the same as the rated charging current of the pack. It does not matter whether the packs are as empty or not, since the individual cells get balanced (although if there are big differences, balancing seems to take time at least on my charger). All that matters is that both packs have the same capacity and can handle the same charging current.
You can also make the same kind of adapters for 2S batteries, or even for the batteries more than 3S. The only limiting factor is that how many cells your charger can support at one time.
You can find schematics to adapters from my blog: http://antibore.wordpress.com/2012/02/02/charging-two-3s-li-po-packs-at-the-same-time/